STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ER57_17840phenylacetate--CoA ligase; Catalyzes the activation of phenylacetic acid (PA) to phenylacetyl-CoA (PA-CoA). (433 aa)    
Predicted Functional Partners:
ER57_08635
1-pyrroline-5-carboxylate dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 0.884
ER57_18365
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 0.883
livF-2
Leucine/isoleucine/valine transporter ATP-binding subunit; With LivGHMJ and LivGHMK is part of the high-affinity branched-chain amino acid transport system; LivFGHMK is specific for the transport of leucine, while LivFGHMJ is a transporter for leucine, isoleucine, and valine; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 
  0.844
ER57_00900
Protein tyrosine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.
    
  0.694
ER57_05285
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 
 0.617
ER57_11015
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
  
 
0.561
ER57_18115
Amino acid-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
   0.481
ER57_12300
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
   0.478
ER57_17735
Oxidoreductase; Derived by automated computational analysis using gene prediction method: Protein Homology.
    
 0.468
ER57_10180
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
   0.446
Your Current Organism:
Smithella sp. SCADC
NCBI taxonomy Id: 1499107
Other names: S. sp. SCADC, Smithella sp. enrichment culture clone SCADC
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