STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EV12_2111Cyanobacteria-specific RpoD-like sigma factor; Alternative locus ID: PMIT0701_2922; type-6. (124 aa)    
Predicted Functional Partners:
rpoA
DNA-directed RNA polymerasee alpha subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
  
 
 
 0.837
rpoB
DNA-directed RNA polymerasee beta subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
   
 
 0.825
rpoZ
DNA-directed RNA polymerasee omega subunit; Promotes RNA polymerase assembly. Latches the N- and C- terminal regions of the beta' subunit thereby facilitating its interaction with the beta and alpha subunits.
    
 
 0.810
EV12_2944
Cyanobacteria-specific RpoD-like sigma factor; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released.
  
     0.697
rpoC2
DNA-directed RNA polymerasee delta (beta'') subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Belongs to the RNA polymerase beta' chain family. RpoC2 subfamily.
   
 
 0.633
rpoC1
DNA-directed RNA polymerasee gamma subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
   
 
 0.617
EV12_2182
Putative arsenate reductase; Alternative locus ID: PMIT0701_2686; Belongs to the ArsC family.
    
   0.511
dnaG
DNA primase; RNA polymerase that catalyzes the synthesis of short RNA molecules used as primers for DNA polymerase during DNA replication.
  
  
 0.484
EV12_0306
Glutathione S-transferase domain protein; Alternative locus ID: PMIT0701_1778.
    
   0.446
EV12_1797
Glutathione S-transferase protein; Alternative locus ID: PMIT0701_0672.
    
   0.446
Your Current Organism:
Prochlorococcus sp. MIT0701
NCBI taxonomy Id: 1499502
Other names: P. sp. MIT 0701, Prochlorococcus sp. MIT 0701
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