STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CDZ96056.1Hypothetical protein. (461 aa)    
Predicted Functional Partners:
CDZ92755.1
Type V secretory pathway, adhesin AidA.
 
    0.938
aidA
Protein AidA.
 
    0.935
CDZ93521.1
Chromosome segregation ATPase.
    
 
 0.886
CDZ96053.1
BNR/Asp-box repeat domain-containing protein.
 
  
 0.886
CDZ93810.1
BNR/Asp-box repeat-containing protein.
 
  
 0.846
CDZ96054.1
Membrane protein.
 
  
 0.843
CDZ93293.1
BNR repeat-containing glycosyl hydrolase.
 
  
 0.797
amiB
N-acetylmuramoyl-L-alanine amidase.
    
   0.793
CDZ93809.1
Patched family protein.
 
  
 0.789
CDZ93292.1
Membrane protein.
 
  
 0.778
Your Current Organism:
Pseudomonas saudiphocaensis
NCBI taxonomy Id: 1499686
Other names: CSUR P1224, P. saudiphocaensis, Pseudomonas sp. 20_BN, strain 20_BN
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.