STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
U14_04637Outer membrane protein. (403 aa)    
Predicted Functional Partners:
U14_00887
Hypothetical protein.
 
 0.957
U14_04659
WD40 domain protein beta Propeller.
  
 0.948
rpsF
30S ribosomal protein S6; Binds together with S18 to 16S ribosomal RNA.
  
   0.947
U14_00794
WD40-like Beta Propeller.
  
 0.932
U14_01495
Periplasmic component of the Tol biopolymer transport system-like protein.
  
 0.932
U14_02825
Myosin-2 heavy chain, non muscle, putative.
  
 0.932
U14_03522
WD40-like Beta Propeller.
  
 0.932
U14_03524
Hypothetical protein.
  
 0.932
U14_04956
Protein tolB.
  
 0.932
rpsL
30S ribosomal protein S12; Interacts with and stabilizes bases of the 16S rRNA that are involved in tRNA selection in the A site and with the mRNA backbone. Located at the interface of the 30S and 50S subunits, it traverses the body of the 30S subunit contacting proteins on the other side and probably holding the rRNA structure together. The combined cluster of proteins S8, S12 and S17 appears to hold together the shoulder and platform of the 30S subunit.
   
 
 0.918
Your Current Organism:
Moduliflexus flocculans
NCBI taxonomy Id: 1499966
Other names: C. Moduliflexus flocculans, Candidatus Moduliflexus flocculans, bacterium UASB14
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.