STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
U14_05274Hydrogenase expression/formation protein HypE. (341 aa)    
Predicted Functional Partners:
U14_05103
Hydrogenase formation HypD protein.
 
 0.995
U14_05104
Hydrogenase assembly chaperone hypC/hupF.
 
 
 0.993
U14_05105
(NiFe) hydrogenase maturation protein HypF.
 
 
 0.988
ribA
Riboflavin biosynthesis protein ribBA; Catalyzes the conversion of GTP to 2,5-diamino-6- ribosylamino-4(3H)-pyrimidinone 5'-phosphate (DARP), formate and pyrophosphate; Belongs to the GTP cyclohydrolase II family. In the N-terminal section; belongs to the DHBP synthase family.
   
   0.853
U14_05106
Hydrogenase accessory protein, HypB.
 
  
 0.852
selA
L-seryl-tRNA selenium transferase; Converts seryl-tRNA(Sec) to selenocysteinyl-tRNA(Sec) required for selenoprotein biosynthesis.
     
 0.632
U14_04932
Hypothetical protein.
   
    0.600
U14_05273
Transposase and inactivated derivatives.
       0.508
U14_04455
Formate hydrogenlyase subunit 5.
   
 
 0.487
U14_04560
Phosphoribosylformylglycinamidine cyclo-ligase.
    
 
 0.431
Your Current Organism:
Moduliflexus flocculans
NCBI taxonomy Id: 1499966
Other names: C. Moduliflexus flocculans, Candidatus Moduliflexus flocculans, bacterium UASB14
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