STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
U27_00054Oligopeptide ABC transporter, ATP-binding protein; Belongs to the ABC transporter superfamily. (336 aa)    
Predicted Functional Partners:
U27_00055
Oligopeptide ABC transporter, permease protein.
 
 0.984
U27_00056
Oligopeptide ABC transporter, permease protein.
 
 
 0.976
U27_06572
ABC transporter, permease.
 
 0.965
U27_04852
Putative dipeptide ABC transporter.
 
 
 0.947
U27_05208
Binding-protein-dependent transport systems inner membrane component.
 
 0.937
U27_00433
Binding-protein-dependent transport systems inner membrane component.
 
 
 0.926
U27_03455
Dipeptide transport system permease protein dppC.
 
 0.924
U27_01635
ABC-type dipeptide/oligopeptide/nickel transport system, permease component.
 
 
 0.911
U27_04547
Putative oligopeptide ABC transporter, permease protein AppC.
 
 0.910
U27_01286
Binding-protein-dependent transport systems inner membrane component.
 
 
 0.906
Your Current Organism:
Vecturithrix granuli
NCBI taxonomy Id: 1499967
Other names: C. Vecturithrix granuli, Candidatus Vecturithrix granuli, bacterium UASB270
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.