STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
U27_00200Transcriptional regulator, TetR family. (214 aa)    
Predicted Functional Partners:
ftsZ
Cell division protein ftsZ; Essential cell division protein that forms a contractile ring structure (Z ring) at the future cell division site. The regulation of the ring assembly controls the timing and the location of cell division. One of the functions of the FtsZ ring is to recruit other cell division proteins to the septum to produce a new cell wall between the dividing cells. Binds GTP and shows GTPase activity.
   
 
 0.864
U27_00204
Export ABC transporter permease protein.
 
   
 0.825
U27_00201
Periplasmic component of efflux system.
 
   
 0.807
U27_00203
ABC transporter-related protein.
 
   
 0.802
U27_00202
ABC transporter-related protein.
 
   
 0.799
U27_00205
ABC-type transporter.
 
   
 0.710
U27_04450
Pyruvate kinase; Belongs to the pyruvate kinase family.
    
 0.649
U27_01302
PP-loop domain protein; Belongs to the TtcA family.
   
   0.561
U27_04870
Putative lipopolysaccharide biosynthesis protein.
   
   0.561
U27_01736
1-pyrroline-5-carboxylate dehydrogenase.
  
  
 0.544
Your Current Organism:
Vecturithrix granuli
NCBI taxonomy Id: 1499967
Other names: C. Vecturithrix granuli, Candidatus Vecturithrix granuli, bacterium UASB270
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.