Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 annotation | node2 annotation | score |
U27_00358 | U27_00359 | Hypothetical protein. | Haloacid dehalogenase, IA family protein. | 0.477 |
U27_00358 | U27_00716 | Hypothetical protein. | Restriction endonuclease S subunit. | 0.443 |
U27_00358 | U27_00828 | Hypothetical protein. | Type I restriction-modification enzyme S subunit. | 0.443 |
U27_00358 | U27_00889 | Hypothetical protein. | YHS domain protein. | 0.443 |
U27_00358 | U27_01716 | Hypothetical protein. | Putative restriction-modification system specificity determinant. | 0.443 |
U27_00358 | U27_03046 | Hypothetical protein. | Restriction modification system DNA specificity domain protein. | 0.443 |
U27_00358 | U27_03275 | Hypothetical protein. | Putative type I restriction-modification system, S subunit. | 0.443 |
U27_00358 | U27_03276 | Hypothetical protein. | Restriction modification system DNA specificity domain. | 0.443 |
U27_00358 | U27_03346 | Hypothetical protein. | Restriction modification system DNA specificity subunit. | 0.443 |
U27_00358 | U27_04094 | Hypothetical protein. | N-6 DNA methylase. | 0.457 |
U27_00359 | U27_00358 | Haloacid dehalogenase, IA family protein. | Hypothetical protein. | 0.477 |
U27_00716 | U27_00358 | Restriction endonuclease S subunit. | Hypothetical protein. | 0.443 |
U27_00716 | U27_04094 | Restriction endonuclease S subunit. | N-6 DNA methylase. | 0.953 |
U27_00828 | U27_00358 | Type I restriction-modification enzyme S subunit. | Hypothetical protein. | 0.443 |
U27_00828 | U27_01716 | Type I restriction-modification enzyme S subunit. | Putative restriction-modification system specificity determinant. | 0.443 |
U27_00828 | U27_04094 | Type I restriction-modification enzyme S subunit. | N-6 DNA methylase. | 0.965 |
U27_00889 | U27_00358 | YHS domain protein. | Hypothetical protein. | 0.443 |
U27_01716 | U27_00358 | Putative restriction-modification system specificity determinant. | Hypothetical protein. | 0.443 |
U27_01716 | U27_00828 | Putative restriction-modification system specificity determinant. | Type I restriction-modification enzyme S subunit. | 0.443 |
U27_01716 | U27_04094 | Putative restriction-modification system specificity determinant. | N-6 DNA methylase. | 0.967 |
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