STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
U27_00482Hypothetical protein. (107 aa)    
Predicted Functional Partners:
U27_00481
Hypothetical protein.
 
     0.943
U27_05436
propionyl-CoA carboxylase carboxyltransferase subunit.
  
 
 0.874
U27_00256
methylmalonyl-CoA decarboxylase, gamma subunit.
  
 
 0.862
U27_00266
Erythronolide synthase.
  
 
 0.824
U27_00649
Hypothetical protein.
 
     0.792
U27_00485
Hypothetical protein.
 
     0.769
ldh
L-lactate dehydrogenase 1; Catalyzes the conversion of lactate to pyruvate. Belongs to the LDH/MDH superfamily. LDH family.
  
 
  0.727
U27_04473
methylmalonyl-CoA mutase.
    
 0.725
U27_04474
methylmalonyl-CoA mutase.
    
 0.725
U27_00697
Putative pterin-4-alpha-carbinolamine dehydratase.
  
  
 0.717
Your Current Organism:
Vecturithrix granuli
NCBI taxonomy Id: 1499967
Other names: C. Vecturithrix granuli, Candidatus Vecturithrix granuli, bacterium UASB270
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.