STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
U27_00506Transcriptional regulator, IclR family. (266 aa)    
Predicted Functional Partners:
U27_03240
Allophanate hydrolase, subunit 1.
  
    0.812
U27_00507
TRAP dicarboxylate transporter, DctM subunit.
    
  0.809
U27_04293
acetyl-CoA acetyltransferase; Belongs to the thiolase-like superfamily. Thiolase family.
  
 
 0.771
U27_00508
TRAP dicarboxylate transporter.
       0.717
U27_06767
Homoaconitate hydratase family protein.
  
  
 0.693
U27_06768
3-isopropylmalate dehydratase large subunit 2.
  
  
 0.693
U27_03302
Urea amidolyase related protein.
  
    0.692
U27_01826
Hypothetical protein; Belongs to the D-glutamate cyclase family.
  
    0.666
pxpA
UPF0271 protein PH0986; Catalyzes the cleavage of 5-oxoproline to form L-glutamate coupled to the hydrolysis of ATP to ADP and inorganic phosphate.
  
    0.665
U27_05187
Hypothetical protein; Involved in the anomeric conversion of L-rhamnose.
  
  
 0.644
Your Current Organism:
Vecturithrix granuli
NCBI taxonomy Id: 1499967
Other names: C. Vecturithrix granuli, Candidatus Vecturithrix granuli, bacterium UASB270
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.