STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
U27_01227Tripartite ATP-independent periplasmic transporter, DctQ component. (165 aa)    
Predicted Functional Partners:
U27_01228
TRAP dicarboxylate transporter, DctM subunit.
 
 0.936
U27_01226
C4-dicarboxylate transport system (C4-dicarboxylate-binding protein).
 
  
 0.932
U27_03252
TRAP-type C4-dicarboxylate transport system, periplasmic component.
 
  
 0.834
U27_01042
DctP9 protein.
 
  
 0.830
U27_02863
TRAP dicarboxylate transporter, DctP subunit.
 
  
 0.826
U27_03331
Trap dicarboxylate transporter, dctp subunit.
 
  
 0.824
U27_02544
Possible C4-dicarboxylate-binding periplasmic protein.
 
  
 0.820
U27_06378
TRAP dicarboxylate transporter, DctP subunit.
 
  
 0.817
U27_04578
TRAP dicarboxylate transporter, DctP subunit.
 
  
 0.812
U27_00503
TRAP dicarboxylate transporter, DctP subunit.
 
  
 0.794
Your Current Organism:
Vecturithrix granuli
NCBI taxonomy Id: 1499967
Other names: C. Vecturithrix granuli, Candidatus Vecturithrix granuli, bacterium UASB270
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.