STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
U27_01243Cytidyltransferase-related domain protein. (333 aa)    
Predicted Functional Partners:
U27_02161
Silent information regulator protein sir2.
   
 
 0.938
cobB
NAD-dependent protein deacetylase; Belongs to the sirtuin family. Class III subfamily.
   
 
 0.938
U27_06591
Hypothetical protein.
   
 
 0.938
U27_07083
Hypothetical protein.
   
 
 0.938
U27_02508
Transcriptional repressor.
  
  
 0.858
U27_05935
Transcriptional regulator, XRE family protein.
   
 
  0.851
nadE
NAD+ synthetase; Catalyzes the ATP-dependent amidation of deamido-NAD to form NAD. Uses L-glutamine as a nitrogen source.
    
 0.838
U27_01641
Transcriptional regulator.
   
  
 0.818
U27_01712
Transcriptional regulator, GntR family.
   
  
 0.818
U27_02031
Transcriptional regulator GntR family protein.
   
  
 0.818
Your Current Organism:
Vecturithrix granuli
NCBI taxonomy Id: 1499967
Other names: C. Vecturithrix granuli, Candidatus Vecturithrix granuli, bacterium UASB270
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.