STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
U27_01459SNARE associated Golgi protein. (252 aa)    
Predicted Functional Partners:
U27_01460
tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA.
     0.987
U27_04044
FAD-dependent pyridine nucleotide-disulfide oxidoreductase.
     0.964
U27_05081
Dihydrolipoyl dehydrogenase.
   
  0.951
U27_05085
Dihydrolipoyl dehydrogenase.
   
  0.951
U27_06131
Dihydrolipoyl dehydrogenase.
   
  0.951
U27_01457
Hypothetical protein.
 
     0.854
U27_01462
Glycosyltransferase involved in cell wall biogenesis.
 
   
 0.851
U27_01466
Hypothetical protein.
     0.848
U27_01463
Sterol desaturase-related protein.
 
  
 0.835
U27_02307
AMP-dependent synthetase and ligase.
   
 0.686
Your Current Organism:
Vecturithrix granuli
NCBI taxonomy Id: 1499967
Other names: C. Vecturithrix granuli, Candidatus Vecturithrix granuli, bacterium UASB270
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.