U27_01584 protein (Vecturithrix granuli) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

U27_01584

Pyruvate-flavodoxin oxidoreductase. (1181 aa)

Predicted Functional Partners:

U27_01012

0.997

U27_00157

0.996

U27_02180

0.996

U27_02181

0.996

U27_06546

0.996

U27_06925

0.996

U27_00156

0.995

U27_00158

0.995

U27_01078

0.995

U27_02046

0.995

Your Current Organism:

Vecturithrix granuli

NCBI taxonomy Id: 1499967
Other names: C. Vecturithrix granuli, Candidatus Vecturithrix granuli, bacterium UASB270

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 annotation	node2 annotation	score
U27_00156	U27_00157	Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine dip-binding domain protein.	Thiamine pyrophosphate enzyme, C-terminal TPP binding domain protein.	0.997
U27_00156	U27_00158	Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine dip-binding domain protein.	2-oxoacid:acceptor oxidoreductase, gamma subunit, pyruvate/2-ketoisovalerate family.	0.993
U27_00156	U27_01012	Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine dip-binding domain protein.	Fumarate reductase/succinate dehydrogenase flavoprotein domain protein.	0.827
U27_00156	U27_01078	Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine dip-binding domain protein.	Pyruvate ferredoxin/flavodoxin oxidoreductase.	0.963
U27_00156	U27_01584	Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine dip-binding domain protein.	Pyruvate-flavodoxin oxidoreductase.	0.995
U27_00156	U27_02046	Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine dip-binding domain protein.	Indolepyruvate oxidoreductase subunit IorB.	0.963
U27_00156	U27_02181	Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine dip-binding domain protein.	Thiamine pyrophosphate protein.	0.985
U27_00156	U27_06546	Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine dip-binding domain protein.	2-oxoglutarate synthase subunit korB.	0.995
U27_00156	U27_06925	Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine dip-binding domain protein.	Thiamine pyrophosphate protein.	0.995
U27_00157	U27_00156	Thiamine pyrophosphate enzyme, C-terminal TPP binding domain protein.	Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine dip-binding domain protein.	0.997
U27_00157	U27_00158	Thiamine pyrophosphate enzyme, C-terminal TPP binding domain protein.	2-oxoacid:acceptor oxidoreductase, gamma subunit, pyruvate/2-ketoisovalerate family.	0.996
U27_00157	U27_01012	Thiamine pyrophosphate enzyme, C-terminal TPP binding domain protein.	Fumarate reductase/succinate dehydrogenase flavoprotein domain protein.	0.797
U27_00157	U27_01078	Thiamine pyrophosphate enzyme, C-terminal TPP binding domain protein.	Pyruvate ferredoxin/flavodoxin oxidoreductase.	0.977
U27_00157	U27_01584	Thiamine pyrophosphate enzyme, C-terminal TPP binding domain protein.	Pyruvate-flavodoxin oxidoreductase.	0.996
U27_00157	U27_02046	Thiamine pyrophosphate enzyme, C-terminal TPP binding domain protein.	Indolepyruvate oxidoreductase subunit IorB.	0.977
U27_00157	U27_02180	Thiamine pyrophosphate enzyme, C-terminal TPP binding domain protein.	Pyruvate ferredoxin oxidoreductase, alpha subunit.	0.984
U27_00158	U27_00156	2-oxoacid:acceptor oxidoreductase, gamma subunit, pyruvate/2-ketoisovalerate family.	Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine dip-binding domain protein.	0.993
U27_00158	U27_00157	2-oxoacid:acceptor oxidoreductase, gamma subunit, pyruvate/2-ketoisovalerate family.	Thiamine pyrophosphate enzyme, C-terminal TPP binding domain protein.	0.996
U27_00158	U27_01012	2-oxoacid:acceptor oxidoreductase, gamma subunit, pyruvate/2-ketoisovalerate family.	Fumarate reductase/succinate dehydrogenase flavoprotein domain protein.	0.796
U27_00158	U27_01584	2-oxoacid:acceptor oxidoreductase, gamma subunit, pyruvate/2-ketoisovalerate family.	Pyruvate-flavodoxin oxidoreductase.	0.995