STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
U27_01724PAS modulated sigma54 specific transcriptional regulator, Fis family. (613 aa)    
Predicted Functional Partners:
U27_01723
Multi-sensor hybrid histidine kinase.
   
0.917
U27_04080
RNA polymerase, sigma 54 subunit, RpoN.
 
  
 0.871
U27_03678
Signal transduction histidine kinase, nitrogen specific, NtrB.
 
 0.733
U27_00323
Hypothetical protein.
 
  
 0.717
U27_02327
Hypothetical protein.
 
  
0.712
U27_03137
Chromosome segregation ATPases.
    
 0.711
U27_04766
GAF sensor signal transduction histidine kinase.
  
  
 0.707
U27_04819
Response regulator receiver sensor signal transduction histidine kinase.
  
 0.704
U27_01883
Hypothetical protein.
 
  
 0.701
U27_01858
Response regulator receiver protein.
  
 0.698
Your Current Organism:
Vecturithrix granuli
NCBI taxonomy Id: 1499967
Other names: C. Vecturithrix granuli, Candidatus Vecturithrix granuli, bacterium UASB270
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.