U27_02775 protein (Vecturithrix granuli) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

U27_02775

PBS lyase HEAT domain protein repeat-containing protein. (396 aa)

Predicted Functional Partners:

efp

0.933

U27_02774

0.831

U27_02666

0.799

guaA

0.727

U27_00961

0.716

U27_03359

0.683

U27_02488

0.678

U27_04838

0.676

U27_02776

0.675

U27_04450

0.654

Your Current Organism:

Vecturithrix granuli

NCBI taxonomy Id: 1499967
Other names: C. Vecturithrix granuli, Candidatus Vecturithrix granuli, bacterium UASB270

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
U27_00961	U27_02488	U27_00961	U27_02488	PBS lyase HEAT-like repeat domain protein.	Hypothetical protein.	0.479
U27_00961	U27_02666	U27_00961	U27_02666	PBS lyase HEAT-like repeat domain protein.	alpha-Rep4.	0.756
U27_00961	U27_02775	U27_00961	U27_02775	PBS lyase HEAT-like repeat domain protein.	PBS lyase HEAT domain protein repeat-containing protein.	0.716
U27_00961	U27_04450	U27_00961	U27_04450	PBS lyase HEAT-like repeat domain protein.	Pyruvate kinase; Belongs to the pyruvate kinase family.	0.597
U27_00961	U27_04838	U27_00961	U27_04838	PBS lyase HEAT-like repeat domain protein.	Heat-like repeat-containing protein.	0.442
U27_00961	efp	U27_00961	U27_04179	PBS lyase HEAT-like repeat domain protein.	Elongation factor P; Involved in peptide bond synthesis. Stimulates efficient translation and peptide-bond synthesis on native or reconstituted 70S ribosomes in vitro. Probably functions indirectly by altering the affinity of the ribosome for aminoacyl-tRNA, thus increasing their reactivity as acceptors for peptidyl transferase.	0.932
U27_00961	guaA	U27_00961	U27_04410	PBS lyase HEAT-like repeat domain protein.	GMP synthase [glutamine-hydrolyzing]; Catalyzes the synthesis of GMP from XMP.	0.682
U27_02488	U27_00961	U27_02488	U27_00961	Hypothetical protein.	PBS lyase HEAT-like repeat domain protein.	0.479
U27_02488	U27_02666	U27_02488	U27_02666	Hypothetical protein.	alpha-Rep4.	0.686
U27_02488	U27_02775	U27_02488	U27_02775	Hypothetical protein.	PBS lyase HEAT domain protein repeat-containing protein.	0.678
U27_02488	U27_03359	U27_02488	U27_03359	Hypothetical protein.	Alr1903 protein.	0.667
U27_02488	U27_04450	U27_02488	U27_04450	Hypothetical protein.	Pyruvate kinase; Belongs to the pyruvate kinase family.	0.622
U27_02488	U27_04838	U27_02488	U27_04838	Hypothetical protein.	Heat-like repeat-containing protein.	0.666
U27_02488	efp	U27_02488	U27_04179	Hypothetical protein.	Elongation factor P; Involved in peptide bond synthesis. Stimulates efficient translation and peptide-bond synthesis on native or reconstituted 70S ribosomes in vitro. Probably functions indirectly by altering the affinity of the ribosome for aminoacyl-tRNA, thus increasing their reactivity as acceptors for peptidyl transferase.	0.935
U27_02488	guaA	U27_02488	U27_04410	Hypothetical protein.	GMP synthase [glutamine-hydrolyzing]; Catalyzes the synthesis of GMP from XMP.	0.886
U27_02666	U27_00961	U27_02666	U27_00961	alpha-Rep4.	PBS lyase HEAT-like repeat domain protein.	0.756
U27_02666	U27_02488	U27_02666	U27_02488	alpha-Rep4.	Hypothetical protein.	0.686
U27_02666	U27_02775	U27_02666	U27_02775	alpha-Rep4.	PBS lyase HEAT domain protein repeat-containing protein.	0.799
U27_02666	U27_03359	U27_02666	U27_03359	alpha-Rep4.	Alr1903 protein.	0.847
U27_02666	U27_04450	U27_02666	U27_04450	alpha-Rep4.	Pyruvate kinase; Belongs to the pyruvate kinase family.	0.654