STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
U27_03107Iron-sulfur flavoprotein. (183 aa)    
Predicted Functional Partners:
U27_05111
Hypothetical protein.
 
  
  0.696
U27_03279
Hypothetical protein.
 
  
  0.661
U27_01058
Peptidoglycan-binding LysM.
   
  
 0.655
U27_03834
Hypothetical protein.
   
  
 0.655
U27_04147
LysM domain protein.
   
  
 0.655
U27_01945
Putative serine protein kinase, PrkA.
   
    0.634
U27_01948
Putative serine protein kinase, PrkA.
   
    0.634
U27_01147
Transketolase, TK; Catalyzes the transfer of a two-carbon ketol group from a ketose donor to an aldose acceptor, via a covalent intermediate with the cofactor thiamine pyrophosphate.
  
  
 0.631
U27_06908
Transketolase domain protein.
  
  
 0.631
U27_01946
Hypothetical protein.
   
    0.630
Your Current Organism:
Vecturithrix granuli
NCBI taxonomy Id: 1499967
Other names: C. Vecturithrix granuli, Candidatus Vecturithrix granuli, bacterium UASB270
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.