U27_03124 protein (Vecturithrix granuli) - STRING interaction network

Nodes:

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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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second shell of interactors

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filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

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Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

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[Homology]

Score

U27_03124

Hypothetical protein. (142 aa)

Predicted Functional Partners:

U27_03125

0.773

U27_03604

0.691

U27_03901

0.691

U27_01620

0.654

U27_03122

0.548

U27_03123

0.548

U27_03126

0.492

U27_04902

0.474

U27_03127

0.464

U27_00774

0.451

Your Current Organism:

Vecturithrix granuli

NCBI taxonomy Id: 1499967
Other names: C. Vecturithrix granuli, Candidatus Vecturithrix granuli, bacterium UASB270

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Browse interactions in tabular form:

node1	node2	node1 annotation	node2 annotation	score
U27_00774	U27_03124	Coenzyme F420 hydrogenase/dehydrogenase beta subunit domain protein.	Hypothetical protein.	0.451
U27_00774	U27_03126	Coenzyme F420 hydrogenase/dehydrogenase beta subunit domain protein.	Pyruvate formate-lyase.	0.518
U27_00774	U27_03604	Coenzyme F420 hydrogenase/dehydrogenase beta subunit domain protein.	Putative glycolate oxidase, subunit GlcD.	0.559
U27_00774	U27_03901	Coenzyme F420 hydrogenase/dehydrogenase beta subunit domain protein.	CoB--CoM heterodisulfide reductase.	0.649
U27_01620	U27_03124	ATP:corrinoid adenosyltransferase.	Hypothetical protein.	0.654
U27_03122	U27_03123	Binding-protein-dependent transport systems inner membrane component.	Binding-protein-dependent transport systems inner membrane component.	0.981
U27_03122	U27_03124	Binding-protein-dependent transport systems inner membrane component.	Hypothetical protein.	0.548
U27_03122	U27_03125	Binding-protein-dependent transport systems inner membrane component.	Glucokinase, ROK family.	0.553
U27_03123	U27_03122	Binding-protein-dependent transport systems inner membrane component.	Binding-protein-dependent transport systems inner membrane component.	0.981
U27_03123	U27_03124	Binding-protein-dependent transport systems inner membrane component.	Hypothetical protein.	0.548
U27_03123	U27_03125	Binding-protein-dependent transport systems inner membrane component.	Glucokinase, ROK family.	0.553
U27_03124	U27_00774	Hypothetical protein.	Coenzyme F420 hydrogenase/dehydrogenase beta subunit domain protein.	0.451
U27_03124	U27_01620	Hypothetical protein.	ATP:corrinoid adenosyltransferase.	0.654
U27_03124	U27_03122	Hypothetical protein.	Binding-protein-dependent transport systems inner membrane component.	0.548
U27_03124	U27_03123	Hypothetical protein.	Binding-protein-dependent transport systems inner membrane component.	0.548
U27_03124	U27_03125	Hypothetical protein.	Glucokinase, ROK family.	0.773
U27_03124	U27_03126	Hypothetical protein.	Pyruvate formate-lyase.	0.492
U27_03124	U27_03127	Hypothetical protein.	Alcohol dehydrogenase GroES domain protein.	0.464
U27_03124	U27_03604	Hypothetical protein.	Putative glycolate oxidase, subunit GlcD.	0.691
U27_03124	U27_03901	Hypothetical protein.	CoB--CoM heterodisulfide reductase.	0.691

page 1 of 3

Network Stats

number of nodes:

11

number of edges:

30

average node degree:

5.45

avg. local clustering coefficient:

0.702

expected number of edges:

11

PPI enrichment p-value:

6.94e-07

your network has significantly more interactions
than expected (what does that mean?)

Functional enrichments in your networkNote: some enrichments may be expected here (why?)
disable highlight explain columns

Biological Process (Gene Ontology)

GO-term

description

count in network

strength

signal

false discovery rate

GO:0006351

Transcription, DNA-templated

4 of 20

1.66

1.68

0.00015

GO:0010467

Gene expression

11 of 212

1.08

1.43

2.10e-09

GO:0006412

Translation

7 of 96

1.22

1.4

1.16e-05

GO:0009059

Macromolecule biosynthetic process

11 of 256

0.99

1.22

7.95e-09

GO:0044271

Cellular nitrogen compound biosynthetic process

11 of 309

0.91

1.04

4.02e-08

(more ...)

Molecular Function (Gene Ontology)

GO-term

description

count in network

strength

signal

false discovery rate

GO:0003899

DNA-directed 5-3 RNA polymerase activity

4 of 6

2.18

2.68

4.52e-06

GO:0019843

rRNA binding

7 of 42

1.58

2.43

1.15e-07

GO:0003735

Structural constituent of ribosome

7 of 52

1.49

2.17

2.25e-07

GO:0003676

Nucleic acid binding

11 of 388

0.81

0.85

2.49e-07

Cellular Component (Gene Ontology)

GO-term

description

count in network

strength

signal

false discovery rate

GO:0000428

DNA-directed RNA polymerase complex

4 of 5

2.26

3.03

9.92e-07

GO:0005840

Ribosome

7 of 56

1.46

2.14

1.41e-07

GO:0015935

Small ribosomal subunit

2 of 6

1.88

1.21

0.0040

GO:0032991

Protein-containing complex

6 of 158

0.94

0.85

0.00024

Reference Publications (PubMed)

publication

(year) title

count in network

strength

signal

false discovery rate

PMID:32589566

(2020) Comparative genomics of the genus Roseburia reveals divergent biosynthetic pathways that may influence colonic competition among species.

3 of 43

1.2

0.65

0.0301

Local Network Cluster (STRING)

cluster

description

count in network

strength

signal

false discovery rate

CL:188

Mixed, incl. Small ribosomal subunit, and K Homology domain, type 2

5 of 7

2.21

3.52

5.93e-08

CL:379

RNA polymerase complex, and Helicase superfamily c-terminal domain

4 of 6

2.18

2.79

2.53e-06

CL:80

Structural constituent of ribosome, and Translation regulator activity

7 of 65

1.39

1.93

3.84e-07

CL:66

Translation, and ATP synthesis

11 of 163

1.19

1.8

6.77e-11

CL:89

Small ribosomal subunit, and Structural constituent of ribosome

2 of 10

1.66

0.72

0.0370

KEGG Pathways

pathway

description

count in network

strength

signal

false discovery rate

map03020

RNA polymerase

4 of 6

2.18

2.82

2.12e-06

map03010

Ribosome

7 of 56

1.46

2.15

1.36e-07

Reactome Pathways

pathway

description

count in network

strength

signal

false discovery rate

MAP-9635486

Infection with Mycobacterium tuberculosis

4 of 43

1.33

1.23

0.00047

MAP-5663205

Infectious disease

4 of 44

1.32

1.22

0.00047

MAP-1643685

Disease

4 of 46

1.3

1.2

0.00047

Subcellular Localization (COMPARTMENTS)

compartment

description

count in network

strength

signal

false discovery rate

GOCC:0005840

Ribosome

6 of 43

1.51

1.95

3.64e-06

GOCC:0022627

Cytosolic small ribosomal subunit

3 of 7

1.99

1.7

0.00040

GOCC:0000428

DNA-directed RNA polymerase complex

4 of 32

1.46

1.37

0.00040

GOCC:0043229

Intracellular organelle

7 of 189

0.93

0.84

0.00028

GOCC:0032991

Protein-containing complex

7 of 339

0.68

0.52

0.0025

(more ...)

Annotated Keywords (UniProt)

keyword

description

count in network

strength

signal

false discovery rate

KW-0240

DNA-directed RNA polymerase

4 of 5

2.26

3.04

9.04e-07

KW-0699

rRNA-binding

7 of 40

1.6

2.61

2.80e-08

KW-0689

Ribosomal protein

7 of 59

1.43

2.08

1.69e-07

KW-0548

Nucleotidyltransferase

4 of 41

1.35

1.19

0.00082

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