STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
U27_03251Hypothetical protein. (196 aa)    
Predicted Functional Partners:
U27_01471
Aminoglycoside phosphotransferase.
   
 
 0.875
ackA
Acetate kinase; Catalyzes the formation of acetyl phosphate from acetate and ATP. Can also catalyze the reverse reaction; Belongs to the acetokinase family.
    
 0.753
rnc
Ribonuclease 3 2; Digests double-stranded RNA. Involved in the processing of primary rRNA transcript to yield the immediate precursors to the large and small rRNAs (23S and 16S). Processes some mRNAs, and tRNAs when they are encoded in the rRNA operon. Processes pre-crRNA and tracrRNA of type II CRISPR loci if present in the organism.
  
    0.663
U27_03541
Aminotransferase class-III.
  
 
 0.659
U27_06240
Glutamate synthase (Ferredoxin).
   
 
 0.659
U27_01584
Pyruvate-flavodoxin oxidoreductase.
    
 0.639
U27_03249
3-hydroxybutyryl-CoA dehydrogenase.
    
  0.636
U27_01670
Glycosyl transferase family 39.
  
    0.634
U27_05563
Conserved protein.
   
    0.630
U27_03089
Prephenate dehydratase.
    
 0.620
Your Current Organism:
Vecturithrix granuli
NCBI taxonomy Id: 1499967
Other names: C. Vecturithrix granuli, Candidatus Vecturithrix granuli, bacterium UASB270
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