STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
U27_03257Short-chain dehydrogenase/reductase SDR; Belongs to the short-chain dehydrogenases/reductases (SDR) family. (243 aa)    
Predicted Functional Partners:
U27_00750
Short-chain alcohol dehydrogenase.
 
 0.895
U27_00584
D-mannonate oxidoreductase.
 
 0.875
U27_01903
Peptide synthetase.
 
 
 0.826
U27_01904
NcpA protein.
 
 
 0.823
U27_03387
JamP protein.
  
 0.808
U27_00266
Erythronolide synthase.
  
 0.795
U27_05827
Beta-hydroxyacyl-(acyl-carrier-protein) dehydratase, FabA/FabZ; Belongs to the thiolase-like superfamily. Beta-ketoacyl-ACP synthases family.
   
 0.783
U27_03390
Amino acid adenylation domain protein.
 
 
 0.748
U27_03386
Non-ribosomal peptide synthase.
 
 
 0.737
U27_03496
Fatty acid desaturase, type 1.
  
 0.720
Your Current Organism:
Vecturithrix granuli
NCBI taxonomy Id: 1499967
Other names: C. Vecturithrix granuli, Candidatus Vecturithrix granuli, bacterium UASB270
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