STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
U27_03447XisI protein. (111 aa)    
Predicted Functional Partners:
U27_03446
FdxN element excision controlling factor XisH.
 
   
 0.954
U27_01135
FdxN element excision controlling factor protein.
 
   
 0.805
U27_06470
Genome sequencing data, contig C307.
 
   
 0.805
U27_06883
FdxN element excision controlling factor protein.
 
   
 0.805
U27_05790
HNH endonuclease.
  
     0.774
U27_05077
HNH endonuclease.
  
     0.773
U27_00688
HNH endonuclease domain protein.
  
     0.767
U27_03448
Hypothetical protein.
       0.732
U27_06965
Hypothetical protein.
  
     0.731
U27_01401
CRISPR-associated protein Csc1.
  
     0.692
Your Current Organism:
Vecturithrix granuli
NCBI taxonomy Id: 1499967
Other names: C. Vecturithrix granuli, Candidatus Vecturithrix granuli, bacterium UASB270
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.