STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
U27_03474UbiA prenyltransferase. (296 aa)    
Predicted Functional Partners:
U27_00336
Polyprenyl synthetase; Belongs to the FPP/GGPP synthase family.
    
 0.702
U27_03475
ABC-type nitrate/sulfonate/bicarbonate transport system.
 
     0.700
U27_03476
Hypothetical protein.
 
     0.700
U27_02369
Hypothetical protein.
    
 0.676
U27_01575
Putative conserved membrane protein; Belongs to the UbiA prenyltransferase family.
    
 0.666
U27_02184
Hypothetical protein.
    
 0.666
U27_02674
Phenylacetic acid degradation protein.
    
 0.666
U27_01904
NcpA protein.
    
 0.654
U27_04442
Preprotein translocase, YajC subunit.
   
    0.630
U27_04331
Methyltransferase type 11.
     
 0.617
Your Current Organism:
Vecturithrix granuli
NCBI taxonomy Id: 1499967
Other names: C. Vecturithrix granuli, Candidatus Vecturithrix granuli, bacterium UASB270
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.