STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
U27_03782Putative acetamidase/formamidase. (299 aa)    
Predicted Functional Partners:
U27_05072
Hypothetical protein VspiD_03825.
  
    0.793
U27_03407
Amidase.
 
 
 0.712
U27_06240
Glutamate synthase (Ferredoxin).
     
 0.703
U27_01354
Putative methylisocitrate/2-methylisocitrate lyase, PrpB.
 
  
  0.675
gatA
glutamyl-tRNA(gln) amidotransferase subunit A; Allows the formation of correctly charged Gln-tRNA(Gln) through the transamidation of misacylated Glu-tRNA(Gln) in organisms which lack glutaminyl-tRNA synthetase. The reaction takes place in the presence of glutamine and ATP through an activated gamma-phospho-Glu- tRNA(Gln).
  
 
 0.672
U27_01497
H(+)/Cl(-) exchange transporter ClcA.
  
    0.662
U27_03592
Malate dehydrogenase.
  
  
 0.653
U27_01015
Uncharacterized NAD/FAD-dependent dehydrogenase.
 
  
  0.646
U27_06242
Glutamine synthetase.
    
 0.638
U27_00256
methylmalonyl-CoA decarboxylase, gamma subunit.
     
 0.620
Your Current Organism:
Vecturithrix granuli
NCBI taxonomy Id: 1499967
Other names: C. Vecturithrix granuli, Candidatus Vecturithrix granuli, bacterium UASB270
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