STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
U27_03914NADH-quinone oxidoreductase chain F. (573 aa)    
Predicted Functional Partners:
U27_05775
Hypothetical protein.
 
 0.999
U27_04644
Selenate reductase YgfK.
 
 0.998
rnfB
Electron transport complex, RnfABCDGE type, B subunit; Part of a membrane-bound complex that couples electron transfer with translocation of ions across the membrane. Belongs to the 4Fe4S bacterial-type ferredoxin family. RnfB subfamily.
  
 0.998
U27_06875
NmrA-like family domain-containing protein 1.
   
 0.998
U27_00601
Hypothetical protein.
  
 0.997
U27_01897
Deoxynucleoside kinase.
   
 0.997
U27_05886
Hypothetical protein.
  
 0.997
U27_06927
Conserved domain protein.
  
 0.997
U27_01904
NcpA protein.
  
 0.995
U27_03919
NADH dehydrogenase, subunit F.
 
0.995
Your Current Organism:
Vecturithrix granuli
NCBI taxonomy Id: 1499967
Other names: C. Vecturithrix granuli, Candidatus Vecturithrix granuli, bacterium UASB270
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.