STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
U27_03940DNA/RNA non-specific endonuclease. (288 aa)    
Predicted Functional Partners:
U27_01015
Uncharacterized NAD/FAD-dependent dehydrogenase.
  
 
 
 0.918
U27_01056
Ribonuclease Z.
   
   0.907
U27_01194
Hypothetical protein.
   
   0.907
U27_01931
Putative hydrolase.
   
   0.907
U27_03098
Hypothetical protein.
   
   0.907
U27_04783
Beta-lactamase domain protein.
   
   0.907
U27_05811
Beta-lactamase domain protein.
   
   0.907
U27_04603
FAD-dependent pyridine nucleotide-disulfide oxidoreductase.
    
 
 0.896
U27_04808
FAD-dependent pyridine nucleotide-disulphide oxidoreductase.
    
 
 0.896
U27_03914
NADH-quinone oxidoreductase chain F.
   
    0.795
Your Current Organism:
Vecturithrix granuli
NCBI taxonomy Id: 1499967
Other names: C. Vecturithrix granuli, Candidatus Vecturithrix granuli, bacterium UASB270
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.