STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
U27_04159Parallel beta-helix repeat protein. (876 aa)    
Predicted Functional Partners:
U27_02514
Fibronectin type III domain protein.
 
 0.963
U27_02572
Phage-related protein.
  
   0.960
U27_00592
Cell surface protein.
 
 0.958
U27_03016
Polymorphic outer membrane protein.
 
 0.957
U27_04746
Hypothetical protein.
 
 0.955
U27_04751
Hypothetical protein.
 
0.952
U27_04161
Hypothetical protein.
  
 0.951
U27_04381
Lipoprotein receptor-related protein.
 
 0.947
U27_05800
FG-GAP repeat protein.
 
 0.942
U27_04160
Fibronectin type III domain protein.
 
 
 
 0.941
Your Current Organism:
Vecturithrix granuli
NCBI taxonomy Id: 1499967
Other names: C. Vecturithrix granuli, Candidatus Vecturithrix granuli, bacterium UASB270
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.