STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
U27_04170TPR domain family protein. (227 aa)    
Predicted Functional Partners:
U27_02947
Protein tolB.
 
  
 0.816
U27_00104
N-acetylmuramoyl-L-alanine amidase.
 
  
  0.757
U27_01980
Peptidase S9B dipeptidylpeptidase IV domain protein.
 
  
 0.749
U27_05061
WD40-like Beta Propeller.
 
  
 0.736
U27_01352
WD40 domain protein beta Propeller.
 
  
 0.725
U27_05070
WD40-like Beta Propeller.
 
  
 0.723
U27_00241
Hypothetical protein.
 
  
 0.720
U27_06322
Hypothetical protein.
  
  
 0.683
U27_05491
Kinase domain protein.
  
  
 0.678
tig
Trigger factor; Involved in protein export. Acts as a chaperone by maintaining the newly synthesized protein in an open conformation. Functions as a peptidyl-prolyl cis-trans isomerase; Belongs to the FKBP-type PPIase family. Tig subfamily.
  
    0.633
Your Current Organism:
Vecturithrix granuli
NCBI taxonomy Id: 1499967
Other names: C. Vecturithrix granuli, Candidatus Vecturithrix granuli, bacterium UASB270
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