STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
psuGPseudouridine-5'-phosphate glycosidase; Catalyzes the reversible cleavage of pseudouridine 5'- phosphate (PsiMP) to ribose 5-phosphate and uracil. Functions biologically in the cleavage direction, as part of a pseudouridine degradation pathway; Belongs to the pseudouridine-5'-phosphate glycosidase family. (314 aa)    
Predicted Functional Partners:
U27_04360
PfkB domain protein.
 
 0.996
U27_06725
Inosine-uridine preferring nucleoside hydrolase family protein.
 
 
  0.702
U27_05026
PfkB domain protein.
 
 
 0.700
U27_05541
Inosine-uridine preferring nucleoside hydrolase.
 
 
  0.697
U27_01470
Inosine-uridine preferring nucleoside hydrolase.
 
 
  0.653
U27_00227
Sugar kinase.
  
 
 0.629
U27_00499
Putative kinase.
  
 
 0.629
U27_00583
2-keto-3-deoxygluconate kinase.
  
 
 0.629
U27_01182
PfkB domain protein.
  
 
 0.629
U27_01699
Putative fructokinase; Belongs to the carbohydrate kinase PfkB family.
  
 
 0.629
Your Current Organism:
Vecturithrix granuli
NCBI taxonomy Id: 1499967
Other names: C. Vecturithrix granuli, Candidatus Vecturithrix granuli, bacterium UASB270
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