STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
U27_04479Hypothetical protein. (458 aa)    
Predicted Functional Partners:
U27_01354
Putative methylisocitrate/2-methylisocitrate lyase, PrpB.
 
  
 0.935
U27_06763
HpcH/HpaI aldolase.
 
  
 0.723
U27_02742
Succinate dehydrogenase and fumarate reductase iron-sulfur protein; Belongs to the succinate dehydrogenase/fumarate reductase iron-sulfur protein family.
 
  
 0.721
ldh
L-lactate dehydrogenase 1; Catalyzes the conversion of lactate to pyruvate. Belongs to the LDH/MDH superfamily. LDH family.
  
  
 0.694
U27_05436
propionyl-CoA carboxylase carboxyltransferase subunit.
  
    0.693
U27_04293
acetyl-CoA acetyltransferase; Belongs to the thiolase-like superfamily. Thiolase family.
  
 
 0.680
U27_03572
Citrate lyase beta chain, acyl lyase subunit; Belongs to the HpcH/HpaI aldolase family.
 
  
 0.655
U27_01309
Probable aminotransferase; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family.
  
 
  0.653
U27_00482
Hypothetical protein.
 
  
 0.649
hutU
Urocanate hydratase; Catalyzes the conversion of urocanate to 4-imidazolone-5- propionate.
   
    0.638
Your Current Organism:
Vecturithrix granuli
NCBI taxonomy Id: 1499967
Other names: C. Vecturithrix granuli, Candidatus Vecturithrix granuli, bacterium UASB270
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