STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
U27_04555Binding-protein-dependent transport systems inner membrane component. (306 aa)    
Predicted Functional Partners:
U27_04556
ABC transporter, Permiase.
 
 0.995
U27_02035
Binding-protein-dependent transport systems inner membrane component.
 
 0.982
U27_05310
Transporter.
 
 0.982
U27_06849
ABC transporter, permease protein.
 
 0.970
U27_00059
AraQ protein.
 
 0.969
U27_03059
Binding-protein-dependent transport systems inner membrane component.
 
 0.969
U27_00896
Carbohydrate ABC transporter membrane protein 2, CUT1 family.
 
 0.968
U27_06825
Sugar ABC transporter, permease-like protein.
 
 0.968
U27_05752
Monosaccharide-transporting ATPase.
 
 0.964
U27_04313
Binding-protein-dependent transport systems inner membrane component.
 
 0.960
Your Current Organism:
Vecturithrix granuli
NCBI taxonomy Id: 1499967
Other names: C. Vecturithrix granuli, Candidatus Vecturithrix granuli, bacterium UASB270
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