STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
U27_04584Uncharacterized protein containing caspase domain-protein. (411 aa)    
Predicted Functional Partners:
U27_04618
Sulphatase-modifying factor protein.
 
     0.924
U27_01198
Hypothetical proteinC1_0012.
     0.913
U27_05333
Hypothetical protein.
     0.912
U27_04362
Sulfatase.
  
   0.880
U27_00073
Sulfatase.
  
   0.879
U27_03542
Hypothetical protein.
  
   0.879
U27_05256
Hypothetical protein.
  
   0.879
U27_05439
Hypothetical protein.
  
   0.879
U27_06464
Hypothetical protein.
  
   0.879
U27_02520
Glutamine amidotransferase class-II.
  
 
 0.750
Your Current Organism:
Vecturithrix granuli
NCBI taxonomy Id: 1499967
Other names: C. Vecturithrix granuli, Candidatus Vecturithrix granuli, bacterium UASB270
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.