STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
U27_04614Methyltransferase type 11. (388 aa)    
Predicted Functional Partners:
U27_01387
Helicase domain protein.
   
 0.960
U27_03873
Metallo-beta-lactamase family protein RNase.
    
 0.937
U27_04999
Helicase-like.
  
 0.936
alaS
alanyl-tRNA synthetase; Catalyzes the attachment of alanine to tRNA(Ala) in a two- step reaction: alanine is first activated by ATP to form Ala-AMP and then transferred to the acceptor end of tRNA(Ala). Also edits incorrectly charged Ser-tRNA(Ala) and Gly-tRNA(Ala) via its editing domain.
   
 0.935
U27_05676
Truncated alanyl-tRNA synthetase.
   
 0.935
U27_01972
Pfs, NACHT and Ankyrin domain protein.
    
 0.909
U27_04905
Ankyrin.
    
 0.909
U27_04604
Histone deacetylase/AcuC/AphA family protein.
    
 0.904
U27_05732
Histone deacetylase superfamily.
    
 0.904
U27_02368
RNP-1 like RNA-binding protein.
    
 0.899
Your Current Organism:
Vecturithrix granuli
NCBI taxonomy Id: 1499967
Other names: C. Vecturithrix granuli, Candidatus Vecturithrix granuli, bacterium UASB270
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