STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
U27_05088DNA-binding protein IolR. (263 aa)    
Predicted Functional Partners:
U27_04809
1-phosphofructokinase; Belongs to the carbohydrate kinase PfkB family.
 
  
 0.867
U27_02890
Putative PTS IIA-like nitrogen-regulatory protein PtsN.
 
  
 0.841
U27_05089
Hypothetical protein.
       0.757
U27_05090
Hypothetical protein; Involved in the import of queuosine (Q) precursors, required for Q precursor salvage; Belongs to the vitamin uptake transporter (VUT/ECF) (TC 2.A.88) family. Q precursor transporter subfamily.
       0.757
U27_02029
Ribose-5-phosphate isomerase.
  
 
 0.748
U27_02320
Sugar-phosphate isomerase, RpiB/LacA/LacB family.
  
 
 0.748
U27_02399
Sugar-phosphate isomerase, RpiB/LacA/LacB family.
  
 
 0.748
U27_02436
Sugar-phosphate isomerase, RpiB/LacA/LacB family.
  
 
 0.748
U27_06188
Hypothetical protein.
  
 
 0.748
U27_01629
Myo-inositol catabolism IolB domain protein.
  
  
 0.690
Your Current Organism:
Vecturithrix granuli
NCBI taxonomy Id: 1499967
Other names: C. Vecturithrix granuli, Candidatus Vecturithrix granuli, bacterium UASB270
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