STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
U27_05703Transcriptional regulator. (277 aa)    
Predicted Functional Partners:
U27_05704
ABC transporter permease protein.
  
 0.998
U27_04679
Hypothetical protein.
 
  
 0.908
U27_01904
NcpA protein.
  
  
 0.712
U27_03386
Non-ribosomal peptide synthase.
  
  
 0.711
U27_02210
Hypothetical protein Plarl_11701.
   
    0.635
U27_02733
YD repeat protein.
   
    0.635
U27_02734
YD repeat protein.
   
    0.635
U27_02736
YD repeat protein.
   
    0.635
U27_03977
YD repeat protein.
   
    0.635
U27_05199
YD repeat protein.
   
    0.635
Your Current Organism:
Vecturithrix granuli
NCBI taxonomy Id: 1499967
Other names: C. Vecturithrix granuli, Candidatus Vecturithrix granuli, bacterium UASB270
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.