STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
U27_05721GutB protein. (350 aa)    
Predicted Functional Partners:
kbl
2-amino-3-ketobutyrate coenzyme A ligase; Catalyzes the cleavage of 2-amino-3-ketobutyrate to glycine and acetyl-CoA.
 
 
 0.817
U27_04011
Serine hydroxymethyltransferase.
  
 
 0.752
U27_06025
Aminomethyltransferase.
  
 
 0.752
U27_01584
Pyruvate-flavodoxin oxidoreductase.
    
 0.691
U27_02890
Putative PTS IIA-like nitrogen-regulatory protein PtsN.
  
 
 0.643
U27_05084
Transketolase central region.
  
 
 0.642
U27_04450
Pyruvate kinase; Belongs to the pyruvate kinase family.
  
 
 0.639
U27_04582
Putative alcohol dehydrogenase.
0.629
U27_02056
Phosphoglucomutase, alpha-D-glucose phosphate-specific.
   
 0.628
U27_05471
4-aminobutyrate aminotransferase; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family.
  
 0.609
Your Current Organism:
Vecturithrix granuli
NCBI taxonomy Id: 1499967
Other names: C. Vecturithrix granuli, Candidatus Vecturithrix granuli, bacterium UASB270
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