STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
U27_05723uroporphyrinogen-III decarboxylase-like protein; Belongs to the uroporphyrinogen decarboxylase family. (371 aa)    
Predicted Functional Partners:
hemC
Porphobilinogen deaminase; Tetrapolymerization of the monopyrrole PBG into the hydroxymethylbilane pre-uroporphyrinogen in several discrete steps. Belongs to the HMBS family.
  
 0.836
U27_02137
Protoporphyrinogen oxidase-like protein.
  
 
 0.809
U27_05392
Probable protoporphyrinogen oxidase protein.
  
 
 0.809
U27_06917
Putative amine oxidase.
  
 
 0.809
U27_00191
Uroporphyrinogen III synthase/methyltransferase.
  
 
 0.687
U27_06465
Putative endonuclease V.
  
    0.630
U27_06240
Glutamate synthase (Ferredoxin).
    
 0.613
U27_04917
Multi-sensor hybrid histidine kinase.
    
 0.546
U27_02871
Putative oxygen-independent coproporphyrinogen III oxidase.
  
 
 0.521
U27_06993
Oxygen-independent coproporphyrinogen III oxidase; Probably acts as a heme chaperone, transferring heme to an unknown acceptor. Binds one molecule of heme per monomer, possibly covalently. Binds 1 [4Fe-4S] cluster. The cluster is coordinated with 3 cysteines and an exchangeable S-adenosyl-L-methionine. Belongs to the anaerobic coproporphyrinogen-III oxidase family.
  
 
 0.521
Your Current Organism:
Vecturithrix granuli
NCBI taxonomy Id: 1499967
Other names: C. Vecturithrix granuli, Candidatus Vecturithrix granuli, bacterium UASB270
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