U27_05763 protein (Vecturithrix granuli) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

U27_05763

Amino acid ABC transporter substrate-binding protein, PAAT family. (266 aa)

Predicted Functional Partners:

U27_05762

0.997

U27_02984

0.942

U27_02987

0.941

U27_06245

0.940

U27_00778

0.938

U27_04483

0.934

U27_00780

0.933

U27_01768

0.933

U27_02986

0.933

U27_00779

0.932

Your Current Organism:

Vecturithrix granuli

NCBI taxonomy Id: 1499967
Other names: C. Vecturithrix granuli, Candidatus Vecturithrix granuli, bacterium UASB270

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 annotation	node2 annotation	score
U27_00778	U27_00779	ABC transporter related protein.	Polar amino acid ABC transporter, inner membrane subunit.	0.997
U27_00778	U27_00780	ABC transporter related protein.	Polar amino acid ABC transporter, inner membrane subunit.	0.998
U27_00778	U27_01768	ABC transporter related protein.	ABC-type amino acid transporter, permease component.	0.995
U27_00778	U27_02984	ABC transporter related protein.	Polar amino acid ABC transporter, inner membrane subunit.	0.998
U27_00778	U27_02986	ABC transporter related protein.	Polar amino acid ABC transporter, inner membrane subunit.	0.996
U27_00778	U27_05762	ABC transporter related protein.	Amino acid ABC transporter membrane protein, PAAT family.	0.994
U27_00778	U27_05763	ABC transporter related protein.	Amino acid ABC transporter substrate-binding protein, PAAT family.	0.938
U27_00779	U27_00778	Polar amino acid ABC transporter, inner membrane subunit.	ABC transporter related protein.	0.997
U27_00779	U27_00780	Polar amino acid ABC transporter, inner membrane subunit.	Polar amino acid ABC transporter, inner membrane subunit.	0.981
U27_00779	U27_01768	Polar amino acid ABC transporter, inner membrane subunit.	ABC-type amino acid transporter, permease component.	0.443
U27_00779	U27_02984	Polar amino acid ABC transporter, inner membrane subunit.	Polar amino acid ABC transporter, inner membrane subunit.	0.515
U27_00779	U27_02986	Polar amino acid ABC transporter, inner membrane subunit.	Polar amino acid ABC transporter, inner membrane subunit.	0.478
U27_00779	U27_02987	Polar amino acid ABC transporter, inner membrane subunit.	ABC transporter related.	0.994
U27_00779	U27_04483	Polar amino acid ABC transporter, inner membrane subunit.	Probable amino acid ABC transporter, ATP-binding protein.	0.994
U27_00779	U27_05762	Polar amino acid ABC transporter, inner membrane subunit.	Amino acid ABC transporter membrane protein, PAAT family.	0.498
U27_00779	U27_05763	Polar amino acid ABC transporter, inner membrane subunit.	Amino acid ABC transporter substrate-binding protein, PAAT family.	0.932
U27_00779	U27_06245	Polar amino acid ABC transporter, inner membrane subunit.	ABC transporter related.	0.994
U27_00780	U27_00778	Polar amino acid ABC transporter, inner membrane subunit.	ABC transporter related protein.	0.998
U27_00780	U27_00779	Polar amino acid ABC transporter, inner membrane subunit.	Polar amino acid ABC transporter, inner membrane subunit.	0.981
U27_00780	U27_01768	Polar amino acid ABC transporter, inner membrane subunit.	ABC-type amino acid transporter, permease component.	0.465