STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
U27_05829Transposase. (131 aa)    
Predicted Functional Partners:
U27_05828
Transposase IS4 family protein.
     0.994
U27_06206
Transposase, IS4 family protein.
  
     0.774
U27_00213
Hypothetical protein.
  
     0.765
U27_04647
Transposase IS4 family protein.
  
     0.608
U27_06829
UPF0316 protein Memar_1511.
  
  
 0.601
U27_04900
Transposase IS4 family protein.
  
     0.597
U27_02332
Glucosamine--fructose-6-phosphate aminotransferase [isomerizing].
  
     0.567
U27_03360
PEGA domain protein.
  
     0.562
U27_06610
Insertion element protein.
  
     0.557
U27_04460
Uncharacterized protein/domain associated with GTPase-like protein.
  
     0.542
Your Current Organism:
Vecturithrix granuli
NCBI taxonomy Id: 1499967
Other names: C. Vecturithrix granuli, Candidatus Vecturithrix granuli, bacterium UASB270
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.