STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
U27_06251TRAP transporter solute receptor, TAXI family. (329 aa)    
Predicted Functional Partners:
U27_06253
TRAP transporter, 4TM/12TM fusion protein.
    0.923
U27_00797
TRAP transporter, 4TM/12TM fusion protein.
    0.897
U27_05399
TRAP transporter, 4TM/12TM fusion protein.
    0.895
U27_03085
TRAP transporter, 4TM/12TM fusion protein.
    0.893
U27_04770
Hypothetical protein, fragment.
    0.893
U27_02507
TRAP transporter, 4TM/12TM fusion protein.
    0.890
U27_03740
TRAP transporter, 4TM/12TM fusion protein.
    0.889
U27_03870
Predicted TRAP-type transport system, permease component.
    0.889
U27_03739
TRAP transporter solute receptor, TAXI family.
  
     0.773
U27_00485
Hypothetical protein.
  
     0.668
Your Current Organism:
Vecturithrix granuli
NCBI taxonomy Id: 1499967
Other names: C. Vecturithrix granuli, Candidatus Vecturithrix granuli, bacterium UASB270
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.