U27_06543 protein (Vecturithrix granuli) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

U27_06543

Putative bacterial extracellular solute-binding protein. (486 aa)

Predicted Functional Partners:

U27_02031

0.797

U27_01940

0.794

U27_02366

0.794

U27_02677

0.794

U27_04765

0.794

U27_06517

0.794

U27_06518

0.794

U27_06932

0.794

U27_07095

0.794

U27_07096

0.794

Your Current Organism:

Vecturithrix granuli

NCBI taxonomy Id: 1499967
Other names: C. Vecturithrix granuli, Candidatus Vecturithrix granuli, bacterium UASB270

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 annotation	node2 annotation	score
U27_01940	U27_06543	ABC-type sugar/spermidine/putrescine/iron/ thiamine transport system, ATPase component; Belongs to the ABC transporter superfamily.	Putative bacterial extracellular solute-binding protein.	0.794
U27_02031	U27_06543	Transcriptional regulator GntR family protein.	Putative bacterial extracellular solute-binding protein.	0.797
U27_02366	U27_06543	SN-glycerol-3-phosphate ABC transporter, ATP-binding protein; Belongs to the ABC transporter superfamily.	Putative bacterial extracellular solute-binding protein.	0.794
U27_02677	U27_06543	Transporter; Belongs to the ABC transporter superfamily.	Putative bacterial extracellular solute-binding protein.	0.794
U27_04765	U27_06543	Sugar ABC transporter, ATP-binding protein; Belongs to the ABC transporter superfamily.	Putative bacterial extracellular solute-binding protein.	0.794
U27_06517	U27_06518	ABC transporter, ATP-binding protein; Belongs to the ABC transporter superfamily.	ABC transporter related; Belongs to the ABC transporter superfamily.	0.813
U27_06517	U27_06543	ABC transporter, ATP-binding protein; Belongs to the ABC transporter superfamily.	Putative bacterial extracellular solute-binding protein.	0.794
U27_06518	U27_06517	ABC transporter related; Belongs to the ABC transporter superfamily.	ABC transporter, ATP-binding protein; Belongs to the ABC transporter superfamily.	0.813
U27_06518	U27_06543	ABC transporter related; Belongs to the ABC transporter superfamily.	Putative bacterial extracellular solute-binding protein.	0.794
U27_06543	U27_01940	Putative bacterial extracellular solute-binding protein.	ABC-type sugar/spermidine/putrescine/iron/ thiamine transport system, ATPase component; Belongs to the ABC transporter superfamily.	0.794
U27_06543	U27_02031	Putative bacterial extracellular solute-binding protein.	Transcriptional regulator GntR family protein.	0.797
U27_06543	U27_02366	Putative bacterial extracellular solute-binding protein.	SN-glycerol-3-phosphate ABC transporter, ATP-binding protein; Belongs to the ABC transporter superfamily.	0.794
U27_06543	U27_02677	Putative bacterial extracellular solute-binding protein.	Transporter; Belongs to the ABC transporter superfamily.	0.794
U27_06543	U27_04765	Putative bacterial extracellular solute-binding protein.	Sugar ABC transporter, ATP-binding protein; Belongs to the ABC transporter superfamily.	0.794
U27_06543	U27_06517	Putative bacterial extracellular solute-binding protein.	ABC transporter, ATP-binding protein; Belongs to the ABC transporter superfamily.	0.794
U27_06543	U27_06518	Putative bacterial extracellular solute-binding protein.	ABC transporter related; Belongs to the ABC transporter superfamily.	0.794
U27_06543	U27_06932	Putative bacterial extracellular solute-binding protein.	ABC transporter related; Belongs to the ABC transporter superfamily.	0.794
U27_06543	U27_07095	Putative bacterial extracellular solute-binding protein.	ABC transporter related; Belongs to the ABC transporter superfamily.	0.794
U27_06543	U27_07096	Putative bacterial extracellular solute-binding protein.	ABC transporter related; Belongs to the ABC transporter superfamily.	0.794
U27_06932	U27_06543	ABC transporter related; Belongs to the ABC transporter superfamily.	Putative bacterial extracellular solute-binding protein.	0.794