STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
U27_06561L-ribulose-5-phosphate 4-epimerase. (229 aa)    
Predicted Functional Partners:
araB
Ribulokinase.
 
 
 0.980
U27_06185
L-arabinose isomerase; Catalyzes the conversion of L-arabinose to L-ribulose.
 
 0.961
U27_06360
L-arabinose isomerase; Catalyzes the conversion of L-arabinose to L-ribulose.
 
 
 0.958
mtnA
Methylthioribose-1-phosphate isomerase 1; Catalyzes the interconversion of methylthioribose-1-phosphate (MTR-1-P) into methylthioribulose-1-phosphate (MTRu-1-P).
  
 
 0.862
U27_03053
Putative L-arabinose isomerase protein; Catalyzes the conversion of L-arabinose to L-ribulose.
 
 
 0.861
U27_07087
FGGY-family pentulose kinase.
 
 0.860
U27_06560
Hypothetical protein ANT_13690.
 
 
 0.853
U27_06763
HpcH/HpaI aldolase.
   
    0.812
U27_03572
Citrate lyase beta chain, acyl lyase subunit; Belongs to the HpcH/HpaI aldolase family.
   
    0.798
U27_02008
L-xylulose kinase LyxK; Belongs to the FGGY kinase family.
 
 
 0.791
Your Current Organism:
Vecturithrix granuli
NCBI taxonomy Id: 1499967
Other names: C. Vecturithrix granuli, Candidatus Vecturithrix granuli, bacterium UASB270
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