STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
U27_06609Trimethylamine methyltransferase. (472 aa)    
Predicted Functional Partners:
U27_01789
Cobalamin B12-binding domain protein.
 
  
 0.842
U27_04771
Cobalamin B12-binding domain protein.
  
 0.838
U27_01118
Ferredoxin.
 
     0.775
U27_01710
Ferredoxin; 4Fe-4S iron-sulfur cluster binding protein.
 
     0.766
U27_01941
Hypothetical protein BACCOPRO_03195; Belongs to the uroporphyrinogen decarboxylase family.
  
  
 0.749
U27_06736
uroporphyrinogen-III decarboxylase-like protein; Belongs to the uroporphyrinogen decarboxylase family.
  
  
 0.744
U27_05188
uroporphyrinogen-III decarboxylase; Belongs to the uroporphyrinogen decarboxylase family.
  
  
 0.720
U27_00510
uroporphyrinogen-III decarboxylase; Belongs to the uroporphyrinogen decarboxylase family.
  
  
 0.718
U27_04150
Methyltransferase, MtaA/CmuA family; Belongs to the uroporphyrinogen decarboxylase family.
  
  
 0.718
U27_00788
Hypothetical protein; Belongs to the uroporphyrinogen decarboxylase family.
  
  
 0.711
Your Current Organism:
Vecturithrix granuli
NCBI taxonomy Id: 1499967
Other names: C. Vecturithrix granuli, Candidatus Vecturithrix granuli, bacterium UASB270
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