STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
U27_06906TRAP-type C4-dicarboxylate transport system, permease component. (428 aa)    
Predicted Functional Partners:
U27_06905
Hypothetical protein.
  
 0.897
U27_06904
Putative C4-dicarboxylate ABC transporter substrate binding protein.
  
 0.896
U27_00368
TRAP transporter solute receptor, DctP family.
 
  
 0.777
U27_01852
Hypothetical protein.
  
 0.775
U27_03695
TRAP dicarboxylate transporter, DctP subunit.
  
 0.762
U27_01220
TRAP dicarboxylate transporter, DctP subunit.
  
 0.758
U27_01968
Transporter.
  
 0.754
U27_03803
TRAP dicarboxylate transporter-DctP subunit.
  
 0.753
U27_02105
TRAP dicarboxylate transporter, DctP subunit.
  
 0.749
U27_04832
Putative C4-dicarboxylate ABC transporter substrate binding protein.
  
 0.745
Your Current Organism:
Vecturithrix granuli
NCBI taxonomy Id: 1499967
Other names: C. Vecturithrix granuli, Candidatus Vecturithrix granuli, bacterium UASB270
Server load: low (30%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.