STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
U27_06990Deoxyribose-phosphate aldolase/phospho-2-dehydro-3-deoxyheptonate aldolase. (296 aa)    
Predicted Functional Partners:
U27_06989
Hypothetical protein.
 
     0.889
U27_06988
Carbohydrate kinase FGGY.
 
  
 0.803
U27_01147
Transketolase, TK; Catalyzes the transfer of a two-carbon ketol group from a ketose donor to an aldose acceptor, via a covalent intermediate with the cofactor thiamine pyrophosphate.
  
 
 0.771
U27_06908
Transketolase domain protein.
  
 
 0.771
U27_04450
Pyruvate kinase; Belongs to the pyruvate kinase family.
    
 0.730
U27_06167
Hypothetical protein.
 
  
 0.730
U27_04809
1-phosphofructokinase; Belongs to the carbohydrate kinase PfkB family.
  
 
 0.714
tal
Transaldolase; Transaldolase is important for the balance of metabolites in the pentose-phosphate pathway.
  
 
 0.713
U27_03696
Probable transaldolase.
  
 
 0.713
U27_06907
Transaldolase.
  
 
 0.713
Your Current Organism:
Vecturithrix granuli
NCBI taxonomy Id: 1499967
Other names: C. Vecturithrix granuli, Candidatus Vecturithrix granuli, bacterium UASB270
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