STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
U27_07066Transcriptional regulator, MarR family. (153 aa)    
Predicted Functional Partners:
U27_07065
MATE efflux family protein.
  
  
 0.807
U27_07067
Hypothetical protein.
       0.773
U27_07070
ABC transporter related protein.
 
   
 0.679
U27_07069
Putative ABC transporter.
 
   
 0.653
U27_07068
Hypothetical protein.
     
 0.557
U27_03958
Predicted iron-sulfur flavoprotein.
  
 
 0.553
U27_05461
Alpha-galactosidase/6-phospho-beta-glucosidase.
  
  
  0.553
U27_05758
6-phospho-beta-glucosidase BglT.
  
  
  0.552
U27_00418
Extradiol ring-cleavage dioxygenase class III protein subunit B.
    
 0.550
U27_05279
Putative alpha-galactosidase.
  
  
  0.550
Your Current Organism:
Vecturithrix granuli
NCBI taxonomy Id: 1499967
Other names: C. Vecturithrix granuli, Candidatus Vecturithrix granuli, bacterium UASB270
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.