STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
U27_07090HAD-superfamily hydrolase, subfamily IIA; Belongs to the HAD-like hydrolase superfamily. (263 aa)    
Predicted Functional Partners:
U27_07089
3-dehydroquinate synthase.
 
 0.911
metG
methionyl-tRNA synthetase; Is required not only for elongation of protein synthesis but also for the initiation of all mRNA translation through initiator tRNA(fMet) aminoacylation.
  
   0.876
U27_03300
Glycerol-1-phosphate dehydrogenase (NAD(P)(+)).
 
 0.836
U27_07091
Hypothetical protein.
       0.689
U27_00599
Methyltransferase.
  
    0.630
U27_07087
FGGY-family pentulose kinase.
  
  
 0.628
U27_02087
D-isomer specific 2-hydroxyacid dehydrogenase NAD-binding protein.
  
 
 0.625
lspA
Lipoprotein signal peptidase; This protein specifically catalyzes the removal of signal peptides from prolipoproteins; Belongs to the peptidase A8 family.
  
    0.623
U27_01876
Pyridoxal kinase; Belongs to the pyridoxine kinase family.
    
 0.602
minC
Probable septum site-determining protein minC; Cell division inhibitor that blocks the formation of polar Z ring septums. Rapidly oscillates between the poles of the cell to destabilize FtsZ filaments that have formed before they mature into polar Z rings. Prevents FtsZ polymerization; Belongs to the MinC family.
  
    0.596
Your Current Organism:
Vecturithrix granuli
NCBI taxonomy Id: 1499967
Other names: C. Vecturithrix granuli, Candidatus Vecturithrix granuli, bacterium UASB270
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