Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
SEC43453.1 | SED00425.1 | SAMN02787142_1379 | SAMN02787142_2344 | Hypothetical protein. | Alpha-ribazole phosphatase. | 0.792 |
SEC43453.1 | SEE98206.1 | SAMN02787142_1379 | SAMN02787142_6137 | Hypothetical protein. | threonyl-tRNA synthetase. | 0.795 |
SEC43453.1 | thrS | SAMN02787142_1379 | SAMN02787142_0250 | Hypothetical protein. | Ser-tRNA(Thr) hydrolase /threonyl-tRNA synthetase; Catalyzes the attachment of threonine to tRNA(Thr) in a two- step reaction: L-threonine is first activated by ATP to form Thr-AMP and then transferred to the acceptor end of tRNA(Thr). | 0.795 |
SED00239.1 | SED00425.1 | SAMN02787142_2340 | SAMN02787142_2344 | Adenosylcobinamide kinase; Catalyzes ATP-dependent phosphorylation of adenosylcobinamide and addition of GMP to adenosylcobinamide phosphate. | Alpha-ribazole phosphatase. | 0.907 |
SED00239.1 | cobQ | SAMN02787142_2340 | SAMN02787142_2339 | Adenosylcobinamide kinase; Catalyzes ATP-dependent phosphorylation of adenosylcobinamide and addition of GMP to adenosylcobinamide phosphate. | Adenosylcobyric acid synthase (glutamine-hydrolysing); Catalyzes amidations at positions B, D, E, and G on adenosylcobyrinic A,C-diamide. NH(2) groups are provided by glutamine, and one molecule of ATP is hydrogenolyzed for each amidation. Belongs to the CobB/CobQ family. CobQ subfamily. | 0.996 |
SED00239.1 | cobS | SAMN02787142_2340 | SAMN02787142_2345 | Adenosylcobinamide kinase; Catalyzes ATP-dependent phosphorylation of adenosylcobinamide and addition of GMP to adenosylcobinamide phosphate. | Cobalamin-5'-phosphate synthase; Joins adenosylcobinamide-GDP and alpha-ribazole to generate adenosylcobalamin (Ado-cobalamin). Also synthesizes adenosylcobalamin 5'-phosphate from adenosylcobinamide-GDP and alpha-ribazole 5'- phosphate; Belongs to the CobS family. | 0.962 |
SED00239.1 | cobT | SAMN02787142_2340 | SAMN02787142_2346 | Adenosylcobinamide kinase; Catalyzes ATP-dependent phosphorylation of adenosylcobinamide and addition of GMP to adenosylcobinamide phosphate. | Nicotinate-nucleotide-dimethylbenzimidazole phosphoribosyltransferase; Catalyzes the synthesis of alpha-ribazole-5'-phosphate from nicotinate mononucleotide (NAMN) and 5,6-dimethylbenzimidazole (DMB). | 0.996 |
SED00425.1 | SEC43453.1 | SAMN02787142_2344 | SAMN02787142_1379 | Alpha-ribazole phosphatase. | Hypothetical protein. | 0.792 |
SED00425.1 | SED00239.1 | SAMN02787142_2344 | SAMN02787142_2340 | Alpha-ribazole phosphatase. | Adenosylcobinamide kinase; Catalyzes ATP-dependent phosphorylation of adenosylcobinamide and addition of GMP to adenosylcobinamide phosphate. | 0.907 |
SED00425.1 | SEE89997.1 | SAMN02787142_2344 | SAMN02787142_5304 | Alpha-ribazole phosphatase. | Hypothetical protein. | 0.792 |
SED00425.1 | SEE98206.1 | SAMN02787142_2344 | SAMN02787142_6137 | Alpha-ribazole phosphatase. | threonyl-tRNA synthetase. | 0.782 |
SED00425.1 | SEF07225.1 | SAMN02787142_2344 | SAMN02787142_7424 | Alpha-ribazole phosphatase. | Hypothetical protein. | 0.792 |
SED00425.1 | cobQ | SAMN02787142_2344 | SAMN02787142_2339 | Alpha-ribazole phosphatase. | Adenosylcobyric acid synthase (glutamine-hydrolysing); Catalyzes amidations at positions B, D, E, and G on adenosylcobyrinic A,C-diamide. NH(2) groups are provided by glutamine, and one molecule of ATP is hydrogenolyzed for each amidation. Belongs to the CobB/CobQ family. CobQ subfamily. | 0.763 |
SED00425.1 | cobS | SAMN02787142_2344 | SAMN02787142_2345 | Alpha-ribazole phosphatase. | Cobalamin-5'-phosphate synthase; Joins adenosylcobinamide-GDP and alpha-ribazole to generate adenosylcobalamin (Ado-cobalamin). Also synthesizes adenosylcobalamin 5'-phosphate from adenosylcobinamide-GDP and alpha-ribazole 5'- phosphate; Belongs to the CobS family. | 0.990 |
SED00425.1 | cobT | SAMN02787142_2344 | SAMN02787142_2346 | Alpha-ribazole phosphatase. | Nicotinate-nucleotide-dimethylbenzimidazole phosphoribosyltransferase; Catalyzes the synthesis of alpha-ribazole-5'-phosphate from nicotinate mononucleotide (NAMN) and 5,6-dimethylbenzimidazole (DMB). | 0.985 |
SED00425.1 | gpmA | SAMN02787142_2344 | SAMN02787142_2903 | Alpha-ribazole phosphatase. | Phosphoglycerate mutase; Catalyzes the interconversion of 2-phosphoglycerate and 3- phosphoglycerate; Belongs to the phosphoglycerate mutase family. BPG- dependent PGAM subfamily. | 0.741 |
SED00425.1 | thrS | SAMN02787142_2344 | SAMN02787142_0250 | Alpha-ribazole phosphatase. | Ser-tRNA(Thr) hydrolase /threonyl-tRNA synthetase; Catalyzes the attachment of threonine to tRNA(Thr) in a two- step reaction: L-threonine is first activated by ATP to form Thr-AMP and then transferred to the acceptor end of tRNA(Thr). | 0.782 |
SEE89997.1 | SED00425.1 | SAMN02787142_5304 | SAMN02787142_2344 | Hypothetical protein. | Alpha-ribazole phosphatase. | 0.792 |
SEE89997.1 | SEE98206.1 | SAMN02787142_5304 | SAMN02787142_6137 | Hypothetical protein. | threonyl-tRNA synthetase. | 0.795 |
SEE89997.1 | thrS | SAMN02787142_5304 | SAMN02787142_0250 | Hypothetical protein. | Ser-tRNA(Thr) hydrolase /threonyl-tRNA synthetase; Catalyzes the attachment of threonine to tRNA(Thr) in a two- step reaction: L-threonine is first activated by ATP to form Thr-AMP and then transferred to the acceptor end of tRNA(Thr). | 0.795 |
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