STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SHM51682.1AraC-type DNA-binding protein. (325 aa)    
Predicted Functional Partners:
SHM51654.1
Protein of unknown function.
       0.773
SHN39198.1
Glutamate synthase (NADPH/NADH) large chain.
    
  0.705
SHM56619.1
AraC family transcriptional regulator, activator of mtrCDE.
  
     0.698
SHN37660.1
Helix-turn-helix domain-containing protein.
  
   0.646
SHM77460.1
Malate dehydrogenase (oxaloacetate-decarboxylating)(NADP+).
     
 0.628
SHM51706.1
Short-chain dehydrogenase; Belongs to the short-chain dehydrogenases/reductases (SDR) family.
 
     0.624
rpoA
DNA-directed RNA polymerase subunit alpha; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
    
   0.608
ribB
3,4-dihydroxy 2-butanone 4-phosphate synthase / GTP cyclohydrolase II; Catalyzes the conversion of D-ribulose 5-phosphate to formate and 3,4-dihydroxy-2-butanone 4-phosphate; Belongs to the DHBP synthase family.
    
  0.591
SHN34196.1
Signal transduction histidine kinase.
     
 0.574
SHM54085.1
AraC-type DNA-binding protein.
  
     0.556
Your Current Organism:
Rhizobacter sp. OV335
NCBI taxonomy Id: 1500264
Other names: R. sp. OV335
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.