STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
kefBGlutathione-regulated potassium-efflux system protein KefB; Pfam matches to PF00999.16 Na_H_Exchanger, and to PF02254.13 TrkA_N; Belongs to the monovalent cation:proton antiporter 2 (CPA2) transporter (TC 2.A.37) family. (541 aa)    
Predicted Functional Partners:
AJC86228.1
Putative protein, putative phosphoglycolate phosphatase; Pfam match to PF13419.1 HAD_2.
       0.813
AJC86227.1
Hypothetical protein.
       0.809
AJC86229.1
Putative protein (DUF2018 domain); Pfam match to PF09442.5 DUF2018.
       0.809
AJC86230.1
Hypothetical protein.
       0.809
cbpA
Co-chaperone-curved DNA binding protein A; Pfam matches to PF00226.26 DnaJ, and to PF01556.13 CTDII, and to PF01556.13 CTDII.
   
 
 0.784
hspR
Heat shock transcriptional regulator, MerR family; Pfam match to PF13411.1 MerR_1.
  
  
 0.780
proS
prolyl-tRNA synthetase; Catalyzes the attachment of proline to tRNA(Pro) in a two- step reaction: proline is first activated by ATP to form Pro-AMP and then transferred to the acceptor end of tRNA(Pro). As ProRS can inadvertently accommodate and process non-cognate amino acids such as alanine and cysteine, to avoid such errors it has two additional distinct editing activities against alanine. One activity is designated as 'pretransfer' editing and involves the tRNA(Pro)-independent hydrolysis of activated Ala-AMP. The other activity is designated 'posttransfer' editing and involves dea [...]
       0.690
menA
1,4-dihydroxy-2-naphthoate octaprenyltransferase; Pfam match to PF01977.11 UbiD; Belongs to the UbiD family.
       0.689
hemC
Hydroxymethylbilane synthase; Tetrapolymerization of the monopyrrole PBG into the hydroxymethylbilane pre-uroporphyrinogen in several discrete steps. Belongs to the HMBS family.
       0.688
ispB
Octaprenyl-diphosphate synthase; Pfam match to PF00348.12 polyprenyl_synt; Belongs to the FPP/GGPP synthase family.
     
 0.678
Your Current Organism:
Campylobacter sp. RM16704
NCBI taxonomy Id: 1500960
Other names: C. sp. RM16704
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.