STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
livKHigh-affinity branched-chain amino acid transporter, periplasmic Leu/Ile/Val-binding protein; Pfam match to PF13458.1 Peripla_BP_6. (371 aa)    
Predicted Functional Partners:
livH
High-affinity branched-chain amino acid transporter, permease protein; Pfam match to PF02653.11 BPD_transp_2; Belongs to the binding-protein-dependent transport system permease family.
 
 
 0.998
livM
High-affinity branched-chain amino acid transporter, permease protein; Pfam match to PF02653.11 BPD_transp_2; Belongs to the binding-protein-dependent transport system permease family.
 
 
 0.998
livG
High-affinity branched-chain amino acid transporter, ATP-binding protein; Pfam matches to PF00005.22 ABC_tran, and to PF12399.3 BCA_ABC_TP_C.
 
 
 0.998
livF
High-affinity branched-chain amino acid transporter, ATP-binding protein; Pfam match to PF00005.22 ABC_tran.
 
 
 0.996
livJ
High-affinity branched-chain amino acid transporter, periplasmic Leu/Ile/Val-binding protein; Pfam match to PF13458.1 Peripla_BP_6.
 
  
 
0.975
ccsBA
Cytochrome c biogenesis protein; Pfam matches to PF01578.15 Cytochrom_C_asm, and to PF05140.9 ResB.
       0.750
AJC86554.1
Cytochrome c553; Pfam match to PF00034.16 Cytochrom_C.
  
    0.732
AJC86562.1
Hypothetical protein.
       0.721
lepA
Leader peptidase A; Required for accurate and efficient protein synthesis under certain stress conditions. May act as a fidelity factor of the translation reaction, by catalyzing a one-codon backward translocation of tRNAs on improperly translocated ribosomes. Back-translocation proceeds from a post-translocation (POST) complex to a pre- translocation (PRE) complex, thus giving elongation factor G a second chance to translocate the tRNAs correctly. Binds to ribosomes in a GTP- dependent manner.
       0.704
cmp2
Major outer membrane protein; Pfam matches to PF05538.6 Campylo_MOMP, and to PF05538.6 Campylo_MOMP.
  
    0.441
Your Current Organism:
Campylobacter sp. RM16704
NCBI taxonomy Id: 1500960
Other names: C. sp. RM16704
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.